cytof_clusterMtrx: Expression values by cluster

In JinmiaoChenLab/cytofkit2: cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets

Expression values by cluster

Description

Generate a matrix of expression values for cells in a cluster

Usage

cytof_clusterMtrx(analysis_results, clusterMethod = NULL, cluster)

Arguments

analysis_results	analysis_results output of cytofkit to extract expression values from.
clusterMethod	The cluster method of interest. If none is selected, the first one will be used.
cluster	The cluster of interest.

Value

A data table with marker expression values of cells in a given cluster

Examples

 
dir <- system.file('extdata',package='cytofkit2')
file <- list.files(dir ,pattern='.RData$', full=TRUE)
load(file)
cluster2_table <- cytof_clusterMtrx(analysis_results, "Rphenograph", 2)

JinmiaoChenLab/cytofkit2 documentation built on May 12, 2022, 8:09 a.m.