cytofkitShinyAPP: A Shiny APP to interactively visualize the analysis results

In JinmiaoChenLab/cytofkit2: cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets

A Shiny APP to interactively visualize the analysis results

Description

Take the the RData object file saved by cytofkit as input, automatically load the data and allow exploration of the analysis results with interactive control

Usage

cytofkitShinyAPP(RData = NULL, onServer = FALSE)

Arguments

RData	Either the RData object file or data object, if missing, RData file need to be loaded on the ShinyAPP
onServer	Logical value, if TRUE, sets shinyApp host to 0.0.0.0 for other clients to access, otherwise defaults to 127.0.0.1 (local host)

Value

Opens shinyApp session for data visualisation

Author(s)

Hao Chen

Examples

d <- system.file('extdata', package = 'cytofkit2')
Rdata <- list.files(d, pattern = '.RData$', full.names = TRUE)
#only for interactive sessions, remove hash to run
#cytofkitShinyAPP(Rdata)

JinmiaoChenLab/cytofkit2 documentation built on May 12, 2022, 8:09 a.m.