cellLineNames: Get cell-line name variants

In JokingHero/ORFik: Open Reading Frames in Genomics

Get cell-line name variants

Description

Used to standardize nomeclature for experiments.
Example: THP1 is main naming, but a variant is THP-1 THP-1 will then be renamed to THP1 (variables in R, can not have - in them)

Usage

cellLineNames(convertToTissue = FALSE)

Arguments

convertToTissue

logical, FALSE. If TRUE, return tissue type. NONE is returned for general non-differentiated cell lines like 3T3.

Value

a data.table with 2 columns, the main name, and all name variants of the main name in second column as a list.

See Also

Other experiment_naming: batchNames(), cellTypeNames(), conditionNames(), fractionNames(), inhibitorNames(), libNames(), mainNames(), repNames(), stageNames(), tissueNames()

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.