View source: R/utils_directory_config.R
config.exper | R Documentation |
Defines a folder for:
1. fastq files (raw_data)
2. bam files (processed data)
3. references (organism annotation and STAR index)
4. Experiment (name of experiment)
config.exper(experiment, assembly, type, config = ORFik::config())
experiment |
short name of experiment (must be valid as a folder name) |
assembly |
name of organism and assembly (must be valid as a folder name) |
type |
name of sequencing type, Ribo-seq, RNA-seq, CAGE.. Can be more than one. |
config |
a named character vector of length 3,
default: |
named character vector of paths for experiment
# Where should files go in general?
ORFik::config()
# Paths for project: "Alexaki_Human" containing Ribo-seq and RNA-seq:
#config.exper("Alexaki_Human", "Homo_sapiens_GRCh38_101", c("Ribo-seq", "RNA-seq"))
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