Files in JosieLHayes/adductomicsR
Processing of adductomic mass spectral datasets
.gitignore
DESCRIPTION
NAMESPACE
R/.gitignore
R/00AdductQuantif-class.R
R/00AdductSpec-class.R
R/IsotopicDistributionMod.R
R/adductQuant.R
R/adductSpecGen.R
R/digestMod.R
R/dotProdMatrix.R
R/dotProdSpectra.R
R/dynamicNoiseFilter.R
R/filterAdductTable.R
R/findPeaks.R
R/generateTargTable.R
R/loessWrapperMod.R
R/ms2Group.R
R/nAdjPeaks.R
R/outputPeakTable.R
R/peakIdQuant_newMethod.R
R/peakIntegrate.R
R/peakListId.R
R/peakRangeSum.R
R/probPeaks.R
R/retentionCorr.R
R/rtDevModelSave.R
R/rtDevModelling.R
R/signalGrouping.R
R/specSimPepId.R
R/spectraCreate.R
R/truePeakTrough.R
README.md
inst/.gitignore
inst/CITATION
inst/NEWS.rd
inst/extdata/ElementMasses.txt
inst/extdata/ORB35018.mzXMLscan1485M798.0402_RT24.52dp0.8varPeakDet5.png
inst/extdata/adjRtPlot.png
inst/extdata/allGroups.png
inst/extdata/allResults_ALVLIAFAQYLQQCPFEDHVK_example.csv
inst/extdata/exampleFalsePosTable.csv
inst/extdata/examplePeakTable.csv
inst/extdata/exampleTruePosTable.csv
inst/extdata/example_adductQuantif_peakList.csv
inst/extdata/exampletargTable2.csv
inst/extdata/internalStandard_plots.png
inst/extdata/internalStandard_plots2.png
inst/extdata/internalStd_scansTable.csv
inst/extdata/modelSpectrum_ALVLIAFAQYLQQCPFEDHVK.csv
inst/extdata/modelSpectrum_RHPYFYAPELLFFAK.csv
inst/extdata/rtDevPlot.png
inst/extdata/runOrder.csv
inst/extdata/runOrder2.csv
inst/extdata/runOrderR3.5.csv
man/.gitignore
man/IsotopicDistributionMod.Rd
man/adductQuant.Rd
man/adductQuantif-class.Rd
man/adductSpec-class.Rd
man/adductSpecGen.Rd
man/digestMod.Rd
man/dotProdMatrix.Rd
man/dotProdSpectra.Rd
man/dynamicNoiseFilter.Rd
man/filterAdductTable.Rd
man/findPeaks.Rd
man/generateTargTable.Rd
man/loessWrapperMod.Rd
man/ms2Group.Rd
man/nAdjPeaks.Rd
man/outputPeakTable.Rd
man/peakIdQuant_newMethod.Rd
man/peakIntegrate.Rd
man/peakListId.Rd
man/peakRangeSum.Rd
man/probPeaks.Rd
man/retentionCorr.Rd
man/rtDevModelSave.Rd
man/rtDevModelling.Rd
man/signalGrouping.Rd
man/specSimPepId.Rd
man/spectraCreate.Rd
man/truePeakTrough.Rd
tests/.gitignore
tests/testthat.R
tests/testthat/test_rtDevModelling.R
tests/testthat/test_specSimPep.R
vignettes/.gitignore
vignettes/adductomicsRWorkflow.Rmd
