count_mir_threshold: Count occurrence of miRNA names above threshold

In JulFriedrich/miRetrieve: miRNA Text Mining in Abstracts

Description

Count occurrence of miRNA names above a threshold.

Usage

count_mir_threshold(df, threshold = 1, col.mir = miRNA, col.pmid = PMID)

Arguments

df	Data frame containing miRNA names and PubMed-IDs.
threshold	Integer or float. If threshold >= 1, counts number of miRNA names in at least threshold abstracts. If threshold is between 0 and 1, counts number of miRNA names mentioned in at least threshold abstracts of all abstracts in df.
col.mir	Symbol. Column containing miRNA names.
col.pmid	Symbol. Column containing PubMed-IDs.

Details

Count occurrence of miRNA names above a threshold. This threshold can either be an absolute value, e.g. 3, or a float between 0 and 1, e.g. 0.2. If threshold is an absolute value, number of distinct miRNA names mentioned in at least threshold abstracts is returned. If threshold is a float between 0 and 1, number of distinct miRNA names mentioned in at least threshold abstracts of all abstracts in df is returned.

Value

Integer with the number of distinct miRNA names in df.

See Also

plot_mir_count_threshold(), count_mir(), plot_mir_count()

Other count functions: count_mir(), count_snp(), plot_mir_count_threshold(), plot_mir_count()

JulFriedrich/miRetrieve documentation built on Sept. 20, 2021, 11:37 p.m.