updateDAcells: Update DA cells

In JunZhao1990/DAseq: Detecting regions of differential abundance between scRNA-seq datasets

Description

Use different threshold to select DA cells based on an output from getDAcells()

Usage

updateDAcells(X, pred.thres = c(0.05, 0.95), do.plot = T,
  plot.embedding = NULL, size = 0.5)

Arguments

X	output from getDAcells()
pred.thres	length-2 vector, top and bottom threshold on the predictions from the logistic classification, default c(0.05,0.95)
do.plot	a logical value to indicate whether to return ggplot objects showing the results, default True
plot.embedding	size N-by-2 matrix, 2D embedding for the cells
size	cell size to use in the plot, default 0.5

Value

a list of results with updated DA cells

JunZhao1990/DAseq documentation built on April 30, 2020, 10:10 a.m.