Man pages for JungsooGIM/LPEseq
LPEseq: local-pooled-error test for RNA-seq data with a small number of replicates
| am.trans | A function performing MA transformation of data with... |
| AVplot | A function plotting average intensity versus variance |
| fixbounds.predict.smooth.spline | A function predicting LPE variance using the output of... |
| generateData | A function generating simulation data |
| LPEseq.matrans | A function performing MA transformation of data without... |
| LPEseq.normalise | A function Normalising input data according to their total... |
| LPEseq.outlier | A function removing outliers |
| LPEseq.predict.var | A function predicting per-gene variance using LPEseq.var()... |
| LPEseq.test | A function testing differential expression between two... |
| LPEseq.var | A function evaluating local pooled error variance with... |
| lpe.var | A function evaluating LPE variance of data with replicates |
| permute | A function performing permutation used in am.trans function |
