Description Usage Arguments Details Value Author(s) References Examples
A function Normalising input data according to their total count values
1 | LPEseq.normalise(expr_dat, method = "mean")
|
expr_dat |
count value matrix (not necessarily to be count matrix; FPKM or RPKM can be applied) |
method |
one of c("mean", "median") for summary of the column sums (default "mean") |
See the reference paper
matrix |
log2 transformed normalized matrix |
Jungsoo Gim
J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)
1 2 3 4 5 | ## Generating simulation datasets
simData <- generateData(n.deg=1000, n.rep=5)
## Normalization
normData <- LPEseq.normalise(simData[,-11])
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