LPEseq.normalise: A function Normalising input data according to their total...

Description Usage Arguments Details Value Author(s) References Examples

Description

A function Normalising input data according to their total count values

Usage

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LPEseq.normalise(expr_dat, method = "mean")

Arguments

expr_dat

count value matrix (not necessarily to be count matrix; FPKM or RPKM can be applied)

method

one of c("mean", "median") for summary of the column sums (default "mean")

Details

See the reference paper

Value

matrix

log2 transformed normalized matrix

Author(s)

Jungsoo Gim

References

J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)

Examples

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## Generating simulation datasets
simData <- generateData(n.deg=1000, n.rep=5)

## Normalization
normData <- LPEseq.normalise(simData[,-11])

JungsooGIM/LPEseq documentation built on May 16, 2019, 10:04 a.m.