LPEseq.test: A function testing differential expression between two...

In JungsooGIM/LPEseq: LPEseq: local-pooled-error test for RNA-seq data with a small number of replicates

Description

A function testing differential expression between two conditions

Usage

LPEseq.test(expr_x, expr_y, n.bin = 100, df = 10, d = 1.2)

Arguments

expr_x	a numeric vector or matrix in first condition
expr_y	a numeric vector or matrix in second condition
n.bin	the number of quantile bins (default 100)
df	degrees of freedom in smooth.spline() function (default 10)
d	expression difference in LPEseq.outlier() function (defalut 0.5; use 1.2 for biological replicates)

Details

See the reference paper

Value

dataframe

dataframe containing mean of each condition, local pooled variance, statistics, p-value, and BH adjusted p-value

Author(s)

Jungsoo Gim

References

J. Gim and T. Park, 2014 (http://bibs.snu.ac.kr/software/LPEseq)

JungsooGIM/LPEseq documentation built on May 16, 2019, 10:04 a.m.