LPEseq.test: A function testing differential expression between two...

Description Usage Arguments Details Value Author(s) References

Description

A function testing differential expression between two conditions

Usage

1
LPEseq.test(expr_x, expr_y, n.bin = 100, df = 10, d = 1.2)

Arguments

expr_x

a numeric vector or matrix in first condition

expr_y

a numeric vector or matrix in second condition

n.bin

the number of quantile bins (default 100)

df

degrees of freedom in smooth.spline() function (default 10)

d

expression difference in LPEseq.outlier() function (defalut 0.5; use 1.2 for biological replicates)

Details

See the reference paper

Value

dataframe

dataframe containing mean of each condition, local pooled variance, statistics, p-value, and BH adjusted p-value

Author(s)

Jungsoo Gim

References

J. Gim and T. Park, 2014 (http://bibs.snu.ac.kr/software/LPEseq)


JungsooGIM/LPEseq documentation built on May 16, 2019, 10:04 a.m.