LPEseq.outlier: A function removing outliers

Description Usage Arguments Details Value Author(s) References Examples

Description

A function removing outliers for evaluating non-repliated RNA-seq data

Usage

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LPEseq.outlier(expr_dat, d = d)

Arguments

expr_dat

expression data with non-replicate per each condition

d

expression difference between condition (log2 scaled)

Details

See the reference paper

Value

matrix

intput matrix outlier-removed

Author(s)

Jungsoo Gim

References

J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)

Examples

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## Generating a non-replicated simulation dataset
simData.norep <- generateData(n.deg=1000, n.rep=1)

## Normalization
normData.norep <- LPEseq.normalise(simData.norep[,-3])

## Removing outliers
normData.inuse <- LPEseq.outlier(normData.norep, d = 1.2)

JungsooGIM/LPEseq documentation built on May 16, 2019, 10:04 a.m.