LPEseq.matrans: A function performing MA transformation of data without...

Description Usage Arguments Details Value Author(s) References Examples

Description

A function performing MA transformation of data without replicate. This is a internal function used in LPEseq.var().

Usage

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Arguments

dat

expression data with non-replicate per each condition

Details

See the reference paper

Value

matrix

MA matrix

Author(s)

Jungsoo Gim

References

J. Gim and T. Park, PLoS ONE under revision (http://bibs.snu.ac.kr/software/LPEseq)

Examples

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## Generating a non-replicated simulation dataset
simData.norep <- generateData(n.deg=1000, n.rep=1)

## Normalization
normData.norep <- LPEseq.normalise(simData.norep[,-3])

## MA transformation
MAdata.norep <- LPEseq.matrans(normData.norep)

JungsooGIM/LPEseq documentation built on May 16, 2019, 10:04 a.m.