Man pages for KSheu/ksheu.lib
KSheu Library1

bed_to_grangesBED to GRanges
calculate_signature_scorescalculate signature scores
intersect_allIntersects all lists
intersect_doPCA_from_file_and_project_second_datasetPCA from file and project second dataset
intersect_log_doPCA_from_file_and_project_second_datasetPCA from file and project second dataset after taking log of...
log_PCA_from_filePCA from file after taking log2
make_loadings_gctfileFormat PCA loadings for IGV
make_rnk_fileMake .rnk file Input: txt file Output: writes out .rnk file
make_scores_fileMakes scores file for IGV
NNMF_from_fileNonnegative matrix factorization
PCA_from_filePCA from file
plot_pcaPlot PCA
plot_pca_and_savePlot PCA with save option
plot_pca_projectionPlot PCA projection and data points from original PCA
plot_pca_projection_allPlot PCA projection and data points from original PCA with...
plot_pca_projection_and_savePlot PCA projection with save option
plot_pca_projection_onlyPlot PCA projection only
plot_plsPlot PLS
PLSDA_from_filePartial Least Squares from file
PLSDA_from_file_and_predict_second_datasetPartial Least Squares and predict second dataset
PLSR_from_filePartial Least Squares Regression from file Last mod: 6/17/18,...
PLSR_from_file_and_predict_second_datasetPartial Least Squares and predict second dataset
varimax_from_fileVarimax rotation from file Last mod: 4/2018, ksheu
KSheu/ksheu.lib documentation built on July 12, 2018, 8:06 p.m.