gsea_squared: #GSEA-squared (last mod. 07/2019 ksheu)
In KSheu/ksheu.lib: KSheu Library1
Description
Input: excel file paths for GSEA output, pos and neg enrichment
Input: keyword groups to search
Output: graph and pvals
Usage
1
2
gsea_squared(file1, file2, keywords, keyword.labels = keywords,
get.keywords = F, dir = getwd())
Arguments
file1, file2
Paths to GSEA excel file outputs
keywords
Keyword groups to search for (eg. c("CELL_CYLE", "INFLAMMATORY|IMMUNE"))
keyword.labels
Labels for keyword groups, in the same order (eg. c("cycle", "immune"))
get.keywords
perform ks tests on individual words to get candidate keywords
dir
set output directory
KSheu/ksheu.lib documentation built on Oct. 14, 2020, 11:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Input: excel file paths for GSEA output, pos and neg enrichment Input: keyword groups to search Output: graph and pvals
Usage
1 2 | gsea_squared(file1, file2, keywords, keyword.labels = keywords,
get.keywords = F, dir = getwd())
|
Arguments
file1, file2 |
Paths to GSEA excel file outputs |
keywords |
Keyword groups to search for (eg. c("CELL_CYLE", "INFLAMMATORY|IMMUNE")) |
keyword.labels |
Labels for keyword groups, in the same order (eg. c("cycle", "immune")) |
get.keywords |
perform ks tests on individual words to get candidate keywords |
dir |
set output directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.