plot_pca_projection_only: Plot PCA projection only

Description Usage Arguments

Description

Plots projection from rotated.scores file (output of intersect_do_PCA_and_project_second_dataset)

Usage

1
2
3
plot_pca_projection_only(rotated.file2, info.name, info.type,
  title = "Projection", labels = TRUE, PCx = "PC1", PCy = "PC2",
  ellipse = F, conf = 0.95, density = F, fliph = F, flipv = F)

Arguments

rotated.file2

File containing scores matrix

info.name

Vector of sample names

info.type

Vector of sample types in the same order

title

Title of the plot

labels

default=T

PCx, PCy

PCs to display

ellipse

Construct confidence region based on groups in info.type, default = T

conf

default = 0.95

density

plot x-y density plots

fliph, flipv

flip plot hoirzontally or vertically


KSheu/ksheu.lib documentation built on Oct. 14, 2020, 11:55 p.m.