plot_pca_projection: Plot PCA projection and data points from original PCA

Description Usage Arguments

View source: R/plot_pca_projection.R

Description

Plots projection from rotated.scores file (output of intersect_do_PCA_and_project_second_dataset) on top of original data

Usage

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plot_pca_projection(file, rotated.file, info.name, info.type, info.name2,
  info.type2, title = "Projection", labels = F, PCx = "PC1",
  PCy = "PC2", ellipse = F, conf = 0.95, fliph = F, flipv = F,
  save = F, savename = "")

Arguments

file

scores file of original data

rotated.file

File containing scores matrix of projected data

info.name

Vector of sample names in original PCA

info.type

Vector of sample types in original PCA in the same order as names

info.name2

Vector of sample names of projected data

info.type2

Vector of sample types of projected data in the same order

title

Title of the plot

labels

default=T

PCx, PCy

PCs to display

ellipse

Construct confidence region based on groups in info.type, default = T

conf

default = 0.95

fliph, flipv

flip plot hoirzontally or vertically

save

save plot as png

savename

name of file saved


KSheu/ksheu.lib documentation built on Oct. 14, 2020, 11:55 p.m.