calculate_signature_scores: calculate signature scores

In KSheu/ksheu.library1: KSheu Library1

calculate signature scores

Description

Reads file with samples in columns and variables in rows, and geneset list. Calculates sum z-score signatures across provided samples, and writes to file Returns dataframe of signature scores

Usage

calculate_signature_scores(file, geneset, info.name = NA,
  info.type = NA, plot.title = "Signature scores")

Arguments

file	Filepath/filename of expression data matrix
geneset	geneset vector
info.name	sample info for plotting if needed
info.type	sample info for plotting if needed
plot.title	plot title

KSheu/ksheu.library1 documentation built on Jan. 28, 2025, 3:26 p.m.