gsea_squared: #GSEA-squared (last mod. 07/2019 ksheu)

In KSheu/ksheu.library1: KSheu Library1

#GSEA-squared (last mod. 07/2019 ksheu)

Description

Input: excel file paths for GSEA output, pos and neg enrichment Input: keyword groups to search Output: graph and pvals

Usage

gsea_squared(file1, file2, keywords, keyword.labels = keywords,
  get.keywords = F, dir = getwd())

Arguments

file1, file2	Paths to GSEA excel file outputs
keywords	Keyword groups to search for (eg. c("CELL_CYLE", "INFLAMMATORY|IMMUNE"))
keyword.labels	Labels for keyword groups, in the same order (eg. c("cycle", "immune"))
get.keywords	perform ks tests on individual words to get candidate keywords
dir	set output directory

KSheu/ksheu.library1 documentation built on Jan. 28, 2025, 3:26 p.m.