do_kmeans_clustering: Do k-means clustering on data matrix, genes in rownames,...

In KSheu/ksheu.library1: KSheu Library1

Do k-means clustering on data matrix, genes in rownames, samples in columnnames Input: Numeric only data matrix with gene names in rownames Output: prints clustered heatmap

Description

Do k-means clustering on data matrix, genes in rownames, samples in columnnames Input: Numeric only data matrix with gene names in rownames Output: prints clustered heatmap

Usage

do_kmeans_clustering(data_matrix, k_clusters = 5, colseps = NULL,
  annotation = NULL, breaks = c(-4, seq(-1.5, 1.5, length = 100), 4))

Arguments

data_matrix	matrix or dataframe to cluster, numeric only
k_clusters	cluster number, default = 5
colseps	vector of numbers for column separation gaps
annotation	Annotation data frame with genenames in rownames

KSheu/ksheu.library1 documentation built on Jan. 28, 2025, 3:26 p.m.