plot_pca_projection_only: Plot PCA projection only

In KSheu/ksheu.library1: KSheu Library1

Plot PCA projection only

Description

Plots projection from rotated.scores file (output of intersect_do_PCA_and_project_second_dataset)

Usage

plot_pca_projection_only(rotated.file2, info.name, info.type,
  title = "Projection", labels = TRUE, PCx = "PC1", PCy = "PC2",
  ellipse = F, conf = 0.95, density = F, fliph = F, flipv = F)

Arguments

rotated.file2	File containing scores matrix
info.name	Vector of sample names
info.type	Vector of sample types in the same order
title	Title of the plot
labels	default=T
PCx, PCy	PCs to display
ellipse	Construct confidence region based on groups in info.type, default = T
conf	default = 0.95
density	plot x-y density plots
fliph, flipv	flip plot hoirzontally or vertically

KSheu/ksheu.library1 documentation built on Jan. 28, 2025, 3:26 p.m.