Man pages for KarchinLab/cancerSeqStudy
Power and False Positive Analysis of Cancer Sequencing Studies
| rateCvToAlphaBeta | Converts mutation rate and coefficient of variation (CV)... |
| ratiometric.bbd.power | Calculates the power in a ratio-metric approach using a... |
| ratiometricBbdPoweredEffectSize | Calculates the effect size of a driver gene according to a... |
| ratiometricBbdRequiredSampleSize | Calculates the smallest sample size to detect driver genes... |
| ratiometric.binom.false.pos | calculates the false positives for a binomial model of a... |
| ratiometric.binom.power | calculates the power in a binomial power model for... |
| ratiometricBinomPoweredEffectSize | Calculates the effect size of a driver gene according to a... |
| ratiometricBinomRequiredSampleSize | Calculates the smallest sample size to detect driver genes... |
| runAnalysisList | This function unpacks a vector x which contains many... |
| runRatiometricAnalysis | Runs the entire power and false positive analysis pipeline. |
| runSmgAnalysis | Runs the entire power and false positive analysis pipeline. |
| smg.bbd.power | calculates the power in a beta-binomial model for... |
| smgBbdPoweredEffectSize | Calculates the smallest effect size in a driver gene for... |
| smgBbdRequiredSampleSize | Calculates the smallest sample size to detect driver genes... |
| smg.binom.false.pos | calculates the false positives in a binomial model for... |
| smg.binom.power | calculates the power in a binomial power model for... |
| smgBinomPoweredEffectSize | Calculates the minimum effect size (with sufficient power) of... |
| smgBinomRequiredSampleSize | Calculates the smallest sample size to detect driver genes... |
| thisfile | Utility function to get location of script when executing... |
