Description Usage Arguments Value
Effect size is measures as the fraction of sample/patient cancers with a non-silent mutation in a driver gene above the background mutation rate.
1 2 | smgBbdPoweredEffectSize(possible.effect.sizes, desired.power, mu, cv, samp.size,
signif.level = 5e-06, Leff = 1500 * 3/4)
|
possible.effect.sizes |
vector of effect sizes |
desired.power |
A floating point number indicating desired power |
mu |
Mutation rate per base |
cv |
Coefficient of Variation surrounding the uncertaintly in mutation rate |
samp.size |
number of cancer samples in study |
signif.level |
significance level for binomial test |
Leff |
effective gene length of CDS in bases for an average gene |
List containing the smallest effect size with sufficient power
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