Files in KevinSee/PITcleanr
Cleans up PIT tag capture histories
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
PITcleanr.Rproj
R/addDirection.R
R/addParentChildNodes.R
R/buildCapHist.R
R/buildConfig.R
R/buildNodeGraph.R
R/buildNodeOrder.R
R/buildParentChild.R
R/buildPaths.R
R/compress.R
R/compressDART.R
R/defineCapHistCols.R
R/editParentChild.R
R/estNodeEff.R
R/estimateFinalLoc.R
R/extractSites.R
R/extractTagObs.R
R/filterDetections.R
R/findDwnStrmSite_RKM.R
R/findDwnstrmHydroseg.R
R/findDwnstrmSite.R
R/getNodeInfo.R
R/listParents.R
R/plotNodes.R
R/prepWrapper.R
R/qcTagHistory.R
R/queryCapHist.R
R/queryFlowlines.R
R/queryInterrogationConfig.R
R/queryInterrogationMeta.R
R/queryMRRDataFile.R
R/queryMRRMeta.R
R/queryObsDART.R
R/queryPtagisMeta.R
R/queryTagEvents.R
R/queryTagsDART.R
R/queryTimerTagSite.R
R/readCTH.R
R/readTestTag.R
R/summarizeTagData.R
R/writeLGRNodeNetwork.R
R/writeOldNetworks.R
R/writePRDNodeNetwork.R
R/writePRONodeNetwork.R
R/writeTUMNodeNetwork.R
R/writeTUMNodeNetwork_noUWE.R
README.Rmd
README.md
_pkgdown.yml
analysis/PITcleanr Vignette Outline.docx
analysis/figures/Antenna_icon.png
analysis/figures/Antenna_icon_bold.png
analysis/figures/Implanter_icon.png
analysis/figures/Implanter_icon_orange.png
analysis/figures/PITcleanr.png
analysis/figures/PITtag_icon.png
analysis/figures/PITtag_icon_green.png
analysis/figures/PITtag_icon_orange.png
analysis/figures/PITtag_icon_orange_bold.png
analysis/figures/PITtag_icon_yellow.png
analysis/figures/PITtag_icon_yellow_bold.png
analysis/figures/Reader_icon.png
analysis/figures/antenna_icon_green.png
analysis/figures/antenna_icon_orange.png
analysis/figures/antenna_icon_orange_bold.png
analysis/figures/antenna_icon_yellow.png
analysis/figures/broom.png
analysis/figures/implanter_icon_green.png
analysis/figures/implanter_icon_yellow.png
analysis/figures/reader_icon_green.png
analysis/figures/reader_icon_orange.png
analysis/figures/reader_icon_yellow.png
analysis/scripts/build_pkgdown_website.R
analysis/scripts/hex_sticker.R
inst/extdata/LEMTRP/LEMTRP Mark_Recapture 2021-22.csv
inst/extdata/LEMTRP/LEMTRP_flowlines.gpkg
inst/extdata/LEMTRP_chnk_cth_2021.csv
inst/extdata/LEMTRP_chnk_tags_2021.txt
inst/extdata/LEMTRP_configuration.csv
inst/extdata/LEMTRP_parent_child.csv
inst/extdata/LGR_chnk_cth_2019.csv
inst/extdata/LGR_chnk_tags_2019.txt
inst/extdata/LGR_configuration.csv
inst/extdata/LGR_parent_child.csv
inst/extdata/PRA_configuration.csv
inst/extdata/PRA_parent_child.csv
inst/extdata/PRA_sthd_cth_2018.csv
inst/extdata/PRA_sthd_tags_2018.txt
inst/extdata/PRO_configuration.csv
inst/extdata/PRO_parent_child.csv
inst/extdata/PRO_sthd_cth_2012.csv
inst/extdata/PRO_sthd_tags_2012.txt
inst/extdata/TUM_chnk_cth_2018.csv
inst/extdata/TUM_chnk_tags_2018.txt
inst/extdata/TUM_configuration.csv
inst/extdata/TUM_parent_child.csv
inst/extdata/non_ptagis/0LL_tagobs_BIOLOGIC_07302022.csv
inst/extdata/non_ptagis/NODENAME_01_00439.log
inst/extdata/non_ptagis/PTAGIS_lemhi_remainingsites_012023.csv
inst/extdata/non_ptagis/SUB2_10.20.22.xlsx
inst/extdata/non_ptagis/TESTSITE_test.txt
inst/test_scripts/prep_pkg_data.R
inst/test_scripts/test_DABOM_prep.R
inst/test_scripts/test_NHDPlusV2.R
inst/test_scripts/test_cjs_lemtrp.R
man/addDirection.Rd
man/addParentChildNodes.Rd
man/buildCapHist.Rd
man/buildConfig.Rd
man/buildNodeGraph.Rd
man/buildNodeOrder.Rd
man/buildParentChild.Rd
man/buildPaths.Rd
man/compress.Rd
man/compressDART.Rd
man/defineCapHistCols.Rd
man/editParentChild.Rd
man/estNodeEff.Rd
man/estimateFinalLoc.Rd
man/extractSites.Rd
man/extractTagObs.Rd
man/figures/logo.png
man/filterDetections.Rd
man/findDwnStrmSite_RKM.Rd
man/findDwnstrmHydroseg.Rd
man/findDwnstrmSite.Rd
man/getNodeInfo.Rd
man/listParents.Rd
man/plotNodes.Rd
man/prepWrapper.Rd
man/qcTagHistory.Rd
man/queryCapHist.Rd
man/queryFlowlines.Rd
man/queryInterrogationConfig.Rd
man/queryInterrogationMeta.Rd
man/queryMRRDataFile.Rd
man/queryMRRMeta.Rd
man/queryObsDART.Rd
man/queryPtagisMeta.Rd
man/queryTagEvents.Rd
man/queryTagsDART.Rd
man/queryTimerTagSite.Rd
man/readCTH.Rd
man/readTestTag.Rd
man/summarizeTagData.Rd
man/writeLGRNodeNetwork.Rd
man/writeOldNetworks.Rd
man/writePRDNodeNetwork.Rd
man/writePRONodeNetwork.Rd
man/writeTUMNodeNetwork.Rd
man/writeTUMNodeNetwork_noUWE.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/Prep_PIT_data.Rmd
vignettes/child_docs/_extract-sites.Rmd
vignettes/child_docs/_install-inst.Rmd
vignettes/child_docs/_query-flowlines.Rmd
vignettes/child_docs/_query-non-ptagis.Rmd
vignettes/child_docs/_query-ptagis.Rmd
vignettes/compress_data.Rmd
vignettes/configuration_files.Rmd
vignettes/parent_child.Rmd
vignettes/quick_prep.Rmd
vignettes/read_in_data.Rmd
