Keyeoh/svconfound: A simple SVD/SVA confounding analysis framework

This package implements a simple strategy for analyzing confounding variation on datasets. The strategy is mostly based on Andrew Teschendorff's book chapter 3 in "Computational and Statistical Epigenomics". It provides two functions for SVD and SVA analysis of the possible confounding variables among the phenotype data and control variables, and implementations of the screeplot and plot methods for them.

install.packages("remotes")
remotes::install_github("Keyeoh/svconfound")