Keyeoh/svconfound: A simple SVD/SVA confounding analysis framework

This package implements a simple strategy for analyzing confounding variation on datasets. The strategy is mostly based on Andrew Teschendorff's book chapter 3 in "Computational and Statistical Epigenomics". It provides two functions for SVD and SVA analysis of the possible confounding variables among the phenotype data and control variables, and implementations of the screeplot and plot methods for them.

Getting started

Package details

LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Keyeoh/svconfound documentation built on Sept. 27, 2017, 12:21 a.m.