A simple SVD/SVA confounding analysis framework

compute_significance_data | Compute associations with phenotypical variables. |

compute_significance_data_var_names | Compute associations with phenotypical variables. |

cut_pvalues | Cut p-values. |

get_control_variables | Get control variables. |

get_p_value | Get p-value from F statistic data. |

get_var_names | Get variable names suitable for analysis. |

phenopart | Partial phenotype information for smallmeth |

plot_significance | Plot results of SVD/SVA confounder analysis. |

plot.SVAAnalysis | Plot results of SVA confounder analysis. |

plot.SVDAnalysis | Plot results of SVD confounder analysis. |

plot_svd_scree | Plot ratio of explained variance. |

screeplot.SVAAnalysis | Plot ratio of explained variance. |

screeplot.SVDAnalysis | Plot ratio of explained variance. |

smallmeth | Small methylation example dataset |

sva_analysis | Perform SVA confounder analysis |

svd_analysis | Perform SVD confounder analysis. |

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