SVA confounding analysis framework

Description Usage Arguments Details Value

Plot results of SVD/SVA confounder analysis as a heatmap where each cell represents the statistical significance of the given association test.

1	plot_significance(x)

`x`	A list containing the results from the confounder analysis function.

This internal function takes the result of either svd_analysis or sva_analysis functions and returns a heatmap representing the degree of significance for each of the performed association tests. Components or surrogate variables are represented on the x axis. Control and phenotype variables are represented in the y axis. The color of each cell corresponds to the degree of statistical significance for the corresponding association test.

A ggplot2 heatmap showing the results of all the association tests.

Keyeoh/svconfound documentation built on May 15, 2019, 1:25 p.m.