Files in Keyeoh/svconfound
A simple SVD/SVA confounding analysis framework
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/plots.r
R/sva_analysis.r
R/svd_analysis.r
R/utils.r
README.md
data/phenopart.rda
data/smallmeth.rda
inst/bin/svconfound.r
man/compute_significance_data.Rd
man/compute_significance_data_var_names.Rd
man/cut_pvalues.Rd
man/get_control_variables.Rd
man/get_p_value.Rd
man/get_var_names.Rd
man/phenopart.Rd
man/plot.SVAAnalysis.Rd
man/plot.SVDAnalysis.Rd
man/plot_significance.Rd
man/plot_svd_scree.Rd
man/screeplot.SVAAnalysis.Rd
man/screeplot.SVDAnalysis.Rd
man/smallmeth.Rd
man/sva_analysis.Rd
man/svd_analysis.Rd
svconfound.Rproj
tests/testthat.R
tests/testthat/test_compute_significance.R
tests/testthat/test_cut_pvalues.R
tests/testthat/test_get_control_variables.R
tests/testthat/test_get_p_value.R
tests/testthat/test_get_var_names.R
tests/testthat/test_plots.R
tests/testthat/test_sva_analysis.R
tests/testthat/test_svd_analysis.R
vignettes/bibliography.bibtex
vignettes/simple_use_case.Rmd
