Man pages for KlugerLab/DAseq
Detecting regions of differential abundance between scRNA-seq datasets
| addDAslot | Add DA slot |
| DAseq | DAseq: Detecting regions of differential abundance between... |
| getDAcells | DA-seq Step 1 & Step 2: select DA cells |
| getDAregion | DA-seq Step 3: get DA regions |
| plotCellLabel | Plot cell labels |
| plotCellScore | Plot a score for each cell |
| plotDAsite | Plot da site |
| runSTG | Run STG |
| SeuratLocalMarkers | Find local markers |
| SeuratMarkerFinder | DA-seq Step 4: Seurat marker finder to characterize DA... |
| STGlocalMarkers | STG local markers Run STG to find a set of genes that... |
| STGmarkerFinder | DA-seq Step 4: STG feature selection |
| updateDAcells | Update DA cells |
| X.2d.melanoma | t-SNE embedding of the melanoma dataset |
| X.label.info | Sample label information |
| X.label.melanoma | Cell sample labels of the melanoma dataset |
| X.melanoma | Top 10 PCs of the melanoma dataset |
