plotCellScore: Plot a score for each cell

In KlugerLab/DAseq: Detecting regions of differential abundance between scRNA-seq datasets

Description

Produce a ggplot object with cells on 2D embedding, colored by a given score for each cell.

Usage

plotCellScore(X, score, cell.col = c("blue", "white", "red"),
  size = 0.5, alpha = 1, shape = 16)

Arguments

X	matrix, 2D embedding of each cell for the plot
score	numeric vector, a single value to color each cell, continuous
cell.col	string vector, color bar to use for "score", defaul c("blue","white","red")
size	numeric, dot size for each cell, default 0.5
alpha	numeric between 0 to 1, dot opacity for each cell, default 1

Value

a ggplot object

KlugerLab/DAseq documentation built on April 13, 2021, 9:02 p.m.