plotCellLabel: Plot cell labels

In KlugerLab/DAseq: Detecting regions of differential abundance between scRNA-seq datasets

Description

Produce a ggplot object with cells on 2D embedding, colored by given labels of each cell.

Usage

plotCellLabel(X, label, cell.col = NULL, size = 0.5, alpha = 1,
  shape = 16, do.label = T, label.size = 4, label.repel = F,
  label.plot = NULL)

Arguments

X	matrix, 2D embedding of each cell for the plot
label	vector, label for each cell
cell.col	string vector, color bar to use for cell labels, default ggplot default
size	numeric, dot size for each cell, default 0.5
alpha	numeric between 0 to 1, dot opacity for each cell, default 1
do.label	a logical value indicating whether to add text to mark each cell label
label.size	numeric, size of text labels, default 4
label.repel	a logical value indicating whether to repel the labels to avoid overlapping, default False
label.plot	cell labels to add text annotations, default NULL, add text for all labels

Value

a ggplot object

KlugerLab/DAseq documentation built on April 13, 2021, 9:02 p.m.