SeuratMarkerFinder: DA-seq Step 4: Seurat marker finder to characterize DA...

In KlugerLab/DAseq: Detecting regions of differential abundance between scRNA-seq datasets

Description

Use Seurat FindMarkers() function to identify characteristic genes for DA regions

Usage

SeuratMarkerFinder(object, da.slot = "da", da.regions.to.run = NULL,
  ...)

Arguments

object	input Seurat object
da.slot	character, variable name that represents DA regions in Seurat meta.data, default "da"
da.regions.to.run	numeric (vector), which DA regions to find markers for, default is to run all regions
...	parameters passed to Seurat FindMarkers() function

Value

a list of markers for DA regions with statistics

KlugerLab/DAseq documentation built on April 13, 2021, 9:02 p.m.