available_genes: Identify available, matching and valid target genes from TCGA...
In KontioJuho/matrinetR: R package for the Analysis of extracellular matrix network dynamics
View source: R/available_genes.R
available_genes R Documentation
Identify available, matching and valid target genes from TCGA and GTEx cohorts
Description
Identify available, matching and valid target genes from TCGA and GTEx cohorts
Usage
available_genes(target_genes, data)
Arguments
target_genes
A character vector of target gene names
data
A dataframe of list of dataframes.
Value
Gene or protein names available in both GTEx and TCGA cohorts for all cancers. If remove.allNA is true, also genes/proteins with all values as NA in any cancer dataframe is are removed.
Examples
print("available_genes(genenames = ECMgenenames)")
KontioJuho/matrinetR documentation built on June 19, 2022, 3:56 p.m.
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View source: R/available_genes.R
| available_genes | R Documentation |
Identify available, matching and valid target genes from TCGA and GTEx cohorts
Description
Identify available, matching and valid target genes from TCGA and GTEx cohorts
Usage
available_genes(target_genes, data)
Arguments
target_genes |
A character vector of target gene names |
data |
A dataframe of list of dataframes. |
Value
Gene or protein names available in both GTEx and TCGA cohorts for all cancers. If remove.allNA is true, also genes/proteins with all values as NA in any cancer dataframe is are removed.
Examples
print("available_genes(genenames = ECMgenenames)")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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