Xenaprep: Omics data downloading and preprocessing function

In KontioJuho/multiJGL: What the Package Does (One Line, Title Case)

Omics data downloading and preprocessing function

Description

Omics data downloading and preprocessing function

Usage

Xenaprep(
  cohort = "TCGA",
  cancertype = "LAML",
  type = c("clinical", "molecular", "mRNA"),
  merge = TRUE
)

Arguments

cohort	Cohort abbreviation from Xenahub.
cancertype	Specific tumor TCGA abbreviation (e.g., "LAML", "BRCA").
type	type to be downloaded and merged including "clinical" "molecular" "mRNA".
merge	If multiple values are given for the type argument, should resulting datasets be merged by sampleID.

Examples

print("")

KontioJuho/multiJGL documentation built on Oct. 30, 2022, 3:42 a.m.