API for KrishnaswamyLab/phemd
Phenotypic EMD for comparison of single-cell samples
| Global functions | |
|---|---|
| .onAttach | Source code |
| GDM | Man page Source code |
| GDM<- | Man page |
| GDM<-,Phemd-method | Man page |
| Phemd | Man page |
| Phemd,ANY,ANY-method | Man page |
| Phemd,character,ANY-method | Man page |
| Phemd-class | Man page |
| Phemd-methods | Man page |
| aggregateSamples | Man page Source code |
| all_expn_data | Man page |
| all_genes | Man page |
| assignCellClusterNearestNode | Man page Source code |
| batchIDs | Man page Source code |
| batchIDs<- | Man page |
| batchIDs<-,Phemd-method | Man page |
| bindSeuratObj | Man page Source code |
| celltypeFreqs | Man page Source code |
| celltypeFreqs<- | Man page |
| celltypeFreqs<-,Phemd-method | Man page |
| clusterIndividualSamples | Man page Source code |
| compareSamples | Man page Source code |
| createDataObj | Man page Source code |
| drawColnames45 | Man page Source code |
| embedCells | Man page Source code |
| gaussianffLocal | Man page Source code |
| generateGDM | Man page Source code |
| getArithmeticCentroids | Man page Source code |
| getCellYield | Man page Source code |
| getSampleCelltypeFreqs | Man page Source code |
| getSampleHistsByCluster | Man page Source code |
| getSampleSizes | Man page Source code |
| groupSamples | Man page Source code |
| heatmap_genes | Man page |
| identifyCentroids | Man page Source code |
| monocleInfo | Man page Source code |
| monocleInfo<- | Man page |
| monocleInfo<-,Phemd-method | Man page |
| orderCellsMonocle | Man page Source code |
| phateInfo | Man page Source code |
| phateInfo<- | Man page |
| phateInfo<-,Phemd-method | Man page |
| plotCellYield | Man page Source code |
| plotEmbeddings | Man page Source code |
| plotGroupedSamplesDmap | Man page Source code |
| plotHeatmaps | Man page Source code |
| plotSummaryHistograms | Man page Source code |
| pooledCells | Man page Source code |
| pooledCells<- | Man page |
| pooledCells<-,Phemd-method | Man page |
| printClusterAssignments | Man page Source code |
| project2MSTUpdated | Source code |
| rawExpn | Man page Source code |
| rawExpn<- | Man page |
| rawExpn<-,Phemd-method | Man page |
| removeTinySamples | Man page Source code |
| retrieveRefClusters | Man page Source code |
| sNames | Man page Source code |
| selectFeatures | Man page Source code |
| selectMarkers | Man page Source code |
| selectMarkers<- | Man page |
| selectMarkers<-,Phemd-method | Man page |
| selected_genes | Man page |
| seuratInfo | Man page Source code |
| seuratInfo<- | Man page |
| seuratInfo<-,Phemd-method | Man page |
| snames_data | Man page |
| subsampledBool | Man page Source code |
| subsampledBool<- | Man page |
| subsampledBool<-,Phemd-method | Man page |
| subsampledIdx | Man page Source code |
| subsampledIdx<- | Man page |
| subsampledIdx<-,Phemd-method | Man page |
