Files in KrishnaswamyLab/phemd
Phenotypic EMD for comparison of single-cell samples
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Phemd-methods.R
R/functions-core.R
R/functions-getResults.R
R/functions-plotting.R
R/zzz.R
README.md
data/all_expn_data.RData
data/all_genes.RData
data/heatmap_genes.RData
data/selected_genes.RData
data/snames_data.RData
man/GDM.Rd
man/Phemd-methods.Rd
man/Phemd.Rd
man/aggregateSamples.Rd
man/all_expn_data.Rd
man/all_genes.Rd
man/assignCellClusterNearestNode.Rd
man/batchIDs.Rd
man/bindSeuratObj.Rd
man/celltypeFreqs.Rd
man/clusterIndividualSamples.Rd
man/compareSamples.Rd
man/createDataObj.Rd
man/drawColnames45.Rd
man/embedCells.Rd
man/gaussianffLocal.Rd
man/generateGDM.Rd
man/getArithmeticCentroids.Rd
man/getCellYield.Rd
man/getSampleCelltypeFreqs.Rd
man/getSampleHistsByCluster.Rd
man/getSampleSizes.Rd
man/groupSamples.Rd
man/heatmap_genes.Rd
man/identifyCentroids.Rd
man/monocleInfo.Rd
man/orderCellsMonocle.Rd
man/phateInfo.Rd
man/plotCellYield.Rd
man/plotEmbeddings.Rd
man/plotGroupedSamplesDmap.Rd
man/plotHeatmaps.Rd
man/plotSummaryHistograms.Rd
man/pooledCells.Rd
man/printClusterAssignments.Rd
man/rawExpn.Rd
man/removeTinySamples.Rd
man/retrieveRefClusters.Rd
man/sNames.Rd
man/selectFeatures.Rd
man/selectMarkers.Rd
man/selected_genes.Rd
man/seuratInfo.Rd
man/snames_data.Rd
man/subsampledBool.Rd
man/subsampledIdx.Rd
phemd.Rproj
phemd_1.15.0.tar.gz
vignettes/melanomaData.RData
vignettes/phemd.Rmd
