cdr_length_across_reps: Plot comparing CDR3 lengths across repertoies
In LSSI-ETH/Ehling_Covid_2021: Plotting functions for Ehling_2021 (Cell Reports)

Description Usage Arguments Value Examples

Plot comparing CDR3 lengths across repertoies

cdr_length_across_reps(
  list_repertoires,
  rep_category,
  length_range = c(6:28),
  chain = "H",
  unique_seqs = TRUE,
  size_x_axis = 10,
  width_height = c(x = 15, y = 15),
  color_scale,
  sample_name = "",
  figure_path = ""
)

`list_repertoires`	List of repertoires
`rep_category`	Metadata
`length_range`	CDR lengths to be considered
`chain`	Heavy (H) or Light (L)
`unique_seqs`	If true sequences are uniqued before length dist is calculated
`size_x_axis`	Size of text on x-axis
`width_height`	Width and height of plot
`color_scale`	Color scale to be applied
`sample_name`	ID of analysis for plot naming
`figure_path`	Path to which figure is saved

TRUE (plots saved as pdfs into path_figures)

1	cdr_length_across_reps(list_repertoires, rep_category, length_range=c(6:28),chain="H",unique_seqs=TRUE, size_x_axis=10,width_height=c(x=15,y=15), color_scale, sample_name="",figure_path="")