enrichment_heatmap_geom_tile: Heatmap of mAb enrichment using geom_tile
In LSSI-ETH/Ehling_Covid_2021: Plotting functions for Ehling_2021 (Cell Reports)

View source: R/enrichment_heatmap_geom_tile.R

Heatmap of mAb enrichment using geom_tile

enrichment_heatmap_geom_tile(
  compare_rep_names = c("nCoV36_S1", "nCoV36_S2"),
  reference_rep_name = "nCoV36_Ab(Background)",
  ref_seqs_name = "ref_n36",
  names_cohort = "default",
  ordered_by = "S2",
  text_size = c(5, 5),
  figure_path
)

`compare_rep_names`	2d vector containing names of samples
`reference_rep_name`	Name of dataset to compare against
`ref_seqs_name`	Reference file (background detection)
`names_cohort`	ID to add to filename
`ordered_by`	Entry by which heatmap should be ordered
`figure_path`	Path to which figures are saved
`mode`	Way in which analysis is performed (pairwise or multi)

TRUE #' @examples enrichment_heatmap_geom_tile(compare_rep_names=c("nCoV36_S1","nCoV36_S2"),reference_rep_name="nCoV36_Ab(Background)",ordered_by="S2",ref_seqs_name="ref_n36",names_cohort="default",mode="multi",figure_path)

LSSI-ETH/Ehling_Covid_2021 documentation built on Dec. 18, 2021, 3:39 a.m.