enrichment_heatmap_standard: Heatmap of mAb enrichment

In LSSI-ETH/Ehling_Covid_2021: Plotting functions for Ehling_2021 (Cell Reports)

Description

Heatmap of mAb enrichment

Usage

enrichment_heatmap_standard(
  compare_rep_names = c("nCoV36_S1", "nCoV36_S2"),
  reference_rep_name = "nCoV36_Ab(Background)",
  ordered_by = "S2",
  ref_seqs_name = "ref_n36",
  names_cohort = "default",
  mode = "multi",
  figure_path
)

Arguments

compare_rep_names	2d vector containing names of samples
reference_rep_name	Name of dataset to compare against
ordered_by	Entry by which heatmap should be ordered
ref_seqs_name	Reference file (background detection)
names_cohort	ID to add to filename
mode	Way in which analysis is performed (pairwise or multi)
figure_path	Path to which figures are saved

Value

TRUE #' @examples enrichment_heatmap_standard(compare_rep_names=c("nCoV36_S1","nCoV36_S2"),reference_rep_name="nCoV36_Ab(Background)",ordered_by="S2",ref_seqs_name="ref_n36",names_cohort="default",mode="multi",figure_path)

LSSI-ETH/Ehling_Covid_2021 documentation built on Dec. 18, 2021, 3:39 a.m.