| $,GInteractions-method |
Man page
|
| $<-,GInteractions-method |
Man page
|
| .ISetToRSE |
Source code
|
| .apply_unique_mods |
Source code
|
| .boundingBox |
Source code
|
| .check_inputs |
Source code
|
| .chooseRegion |
Source code
|
| .coerce_to_union |
Source code
|
| .collate_GRanges |
Source code
|
| .decode_region_mode |
Source code
|
| .enforce_order |
Source code
|
| .expand_to_length |
Source code
|
| .fast_overlap |
Source code
|
| .flipGI |
Source code
|
| .generate_regions |
Source code
|
| .get_dist_output |
Source code
|
| .get_olap_bounds |
Source code
|
| .get_used |
Source code
|
| .linear_olap_finder |
Source code
|
| .linearize |
Source code
|
| .linkOverlap |
Source code
|
| .linkOverlap_Hits |
Source code
|
| .makeNakedMatFromGInteractions |
Source code
|
| .make_to_indices |
Source code
|
| .new_ContactMatrix |
Source code
|
| .new_GInteractions |
Source code
|
| .new_InteractionSet |
Source code
|
| .paired_overlap_finder2 |
Source code
|
| .pasteAnchor |
Source code
|
| .relaxed_strictness_converter |
Source code
|
| .resort_regions |
Source code
|
| .safeNMcols |
Source code
|
| .strict_check |
Source code
|
| .unflipGI |
Source code
|
| ContactMatrix |
Man page
|
| ContactMatrix,ANY,GRanges,GRanges,GenomicRanges_OR_missing-metho |
Man page
|
| ContactMatrix,ANY,numeric,numeric,GRanges-method |
Man page
|
| ContactMatrix,missing,missing,missing,GenomicRanges_OR_missing-m |
Man page
|
| ContactMatrix-access |
Man page
|
| ContactMatrix-class |
Man page
|
| ContactMatrix-dist |
Man page
|
| ContactMatrix-sort |
Man page
|
| ContactMatrix-subset |
Man page
|
| GInteractions |
Man page
|
| GInteractions,GRanges,GRanges,GenomicRanges_OR_missing-method |
Man page
|
| GInteractions,missing,missing,GenomicRanges_OR_missing-method |
Man page
|
| GInteractions,numeric,numeric,GRanges-method |
Man page
|
| GInteractions-class |
Man page
|
| Interaction-overlaps |
Man page
|
| InteractionSet |
Man page
|
| InteractionSet,ANY,GInteractions-method |
Man page
|
| InteractionSet,missing,missing-method |
Man page
|
| InteractionSet-class |
Man page
|
| ReverseStrictGInteractions-class |
Man page
|
| StrictGInteractions-class |
Man page
|
| [,ContactMatrix,ANY,ANY,ANY-method |
Man page
|
| [,ContactMatrix,ANY,ANY-method |
Man page
|
| [,ContactMatrix,ANY-method |
Man page
|
| [,InteractionSet,ANY,ANY,ANY-method |
Man page
|
| [,InteractionSet,ANY,ANY-method |
Man page
|
| [,InteractionSet,ANY-method |
Man page
|
| [<-,ContactMatrix,ANY,ANY,ContactMatrix-method |
Man page
|
| [<-,GInteractions,ANY,GInteractions-method |
Man page
|
| [<-,InteractionSet,ANY,ANY,InteractionSet-method |
Man page
|
| anchorIds |
Man page
|
| anchorIds,ContactMatrix-method |
Man page
|
| anchorIds,GInteractions-method |
Man page
|
| anchorIds,InteractionSet-method |
Man page
|
| anchorIds<- |
Man page
|
| anchorIds<-,ContactMatrix-method |
Man page
|
| anchorIds<-,GInteractions-method |
Man page
|
| anchorIds<-,InteractionSet-method |
Man page
|
| anchorIds<-,ReverseStrictGInteractions-method |
Man page
|
| anchorIds<-,StrictGInteractions-method |
Man page
|
| anchors |
Man page
|
| anchors,ContactMatrix-method |
Man page
|
| anchors,GInteractions-method |
Man page
|
| anchors,InteractionSet-method |
Man page
|
| anchors<- |
Man page
|
| anchors<-,ContactMatrix-method |
Man page
|
| anchors<-,GInteractions-method |
Man page
|
| anchors<-,InteractionSet-method |
Man page
|
| anchors<-,ReverseStrictGInteractions-method |
Man page
|
| anchors<-,StrictGInteractions-method |
Man page
|
| appendRegions<- |
Man page
|
| appendRegions<-,ContactMatrix-method |
Man page
|
| appendRegions<-,GInteractions-method |
Man page
|
| appendRegions<-,InteractionSet-method |
Man page
|
| as.data.frame,GInteractions-method |
Man page
|
| as.matrix,ContactMatrix-method |
Man page
|
| as.matrix<- |
Man page
|
| as.matrix<-,ContactMatrix-method |
Man page
|
| boundingBox |
Man page
|
| boundingBox,GInteractions-method |
Man page
|
| boundingBox,InteractionSet-method |
Man page
|
| c,GInteractions-method |
Man page
|
| cbind,ContactMatrix-method |
Man page
|
| cbind,InteractionSet-method |
Man page
|
| countOverlaps |
Man page
|
| countOverlaps,GInteractions,GInteractions-method |
Man page
|
| countOverlaps,GInteractions,InteractionSet-method |
Man page
|
| countOverlaps,GInteractions,Vector-method |
Man page
|
| countOverlaps,GInteractions,missing-method |
Man page
|
| countOverlaps,InteractionSet,GInteractions-method |
Man page
|
| countOverlaps,InteractionSet,InteractionSet-method |
Man page
|
| countOverlaps,InteractionSet,Vector-method |
Man page
|
| countOverlaps,InteractionSet,missing-method |
Man page
|
| countOverlaps,Vector,GInteractions-method |
Man page
|
| countOverlaps,Vector,InteractionSet-method |
Man page
|
| deflate |
Man page
|
| deflate,ContactMatrix-method |
Man page
|
| dim,ContactMatrix-method |
Man page
|
| dimnames,ContactMatrix-method |
Man page
|
| dimnames<-,ContactMatrix,ANY-method |
Man page
|
| dimnames<-,ContactMatrix-method |
Man page
|
| duplicated,ContactMatrix-method |
Man page
|
| duplicated,GInteractions-method |
Man page
|
| duplicated,InteractionSet-method |
Man page
|
| findOverlaps |
Man page
|
| findOverlaps,GInteractions,GInteractions-method |
Man page
|
| findOverlaps,GInteractions,InteractionSet-method |
Man page
|
| findOverlaps,GInteractions,Vector-method |
Man page
|
| findOverlaps,GInteractions,missing-method |
Man page
|
| findOverlaps,InteractionSet,GInteractions-method |
Man page
|
| findOverlaps,InteractionSet,InteractionSet-method |
Man page
|
| findOverlaps,InteractionSet,Vector-method |
Man page
|
| findOverlaps,InteractionSet,missing-method |
Man page
|
| findOverlaps,Vector,GInteractions-method |
Man page
|
| findOverlaps,Vector,InteractionSet-method |
Man page
|
| first |
Man page
|
| first,GInteractions-method |
Man page
|
| first,InteractionSet-method |
Man page
|
| flank,ContactMatrix-method |
Man page
|
| flank,GInteractions-method |
Man page
|
| flank,InteractionSet-method |
Man page
|
| inflate |
Man page
|
| inflate,GInteractions-method |
Man page
|
| inflate,InteractionSet-method |
Man page
|
| interaction-access |
Man page
|
| interaction-bind |
Man page
|
| interaction-compare |
Man page
|
| interaction-subset |
Man page
|
| interactions |
Man page
|
| interactions,InteractionSet-method |
Man page
|
| interactions<- |
Man page
|
| interactions<-,InteractionSet-method |
Man page
|
| intrachr |
Man page
|
| intrachr,ContactMatrix-method |
Man page
|
| intrachr,GInteractions-method |
Man page
|
| intrachr,InteractionSet-method |
Man page
|
| length,ContactMatrix-method |
Man page
|
| length,GInteractions-method |
Man page
|
| linearize |
Man page
|
| linearize,GInteractions,GRanges-method |
Man page
|
| linearize,GInteractions,numeric-method |
Man page
|
| linearize,InteractionSet,GRanges-method |
Man page
|
| linearize,InteractionSet,numeric-method |
Man page
|
| linkOverlaps |
Man page
|
| linkOverlaps,GInteractions,Hits,Hits-method |
Man page
|
| linkOverlaps,GInteractions,Hits,missing-method |
Man page
|
| linkOverlaps,GInteractions,Vector,Vector-method |
Man page
|
| linkOverlaps,GInteractions,Vector,missing-method |
Man page
|
| linkOverlaps,InteractionSet,Hits,Hits-method |
Man page
|
| linkOverlaps,InteractionSet,Hits,missing-method |
Man page
|
| linkOverlaps,InteractionSet,Vector,Vector-method |
Man page
|
| linkOverlaps,InteractionSet,Vector,missing-method |
Man page
|
| makeGInteractionsFromGRangesPairs |
Man page
Source code
|
| match,GInteractions,GInteractions-method |
Man page
|
| match,GInteractions,InteractionSet-method |
Man page
|
| match,InteractionSet,GInteractions-method |
Man page
|
| match,InteractionSet,InteractionSet-method |
Man page
|
| mcols,InteractionSet-method |
Man page
|
| mcols<-,InteractionSet-method |
Man page
|
| names,GInteractions-method |
Man page
|
| names,InteractionSet-method |
Man page
|
| names<-,GInteractions-method |
Man page
|
| names<-,InteractionSet-method |
Man page
|
| narrow,ContactMatrix-method |
Man page
|
| narrow,GInteractions-method |
Man page
|
| narrow,InteractionSet-method |
Man page
|
| order,ContactMatrix-method |
Man page
|
| order,GInteractions-method |
Man page
|
| order,InteractionSet-method |
Man page
|
| overlapsAny |
Man page
|
| overlapsAny,ContactMatrix,GInteractions-method |
Man page
|
| overlapsAny,ContactMatrix,GRanges-method |
Man page
|
| overlapsAny,ContactMatrix,GRangesList-method |
Man page
|
| overlapsAny,ContactMatrix,InteractionSet-method |
Man page
|
| overlapsAny,GInteractions,GInteractions-method |
Man page
|
| overlapsAny,GInteractions,InteractionSet-method |
Man page
|
| overlapsAny,GInteractions,Vector-method |
Man page
|
| overlapsAny,GInteractions,missing-method |
Man page
|
| overlapsAny,InteractionSet,GInteractions-method |
Man page
|
| overlapsAny,InteractionSet,InteractionSet-method |
Man page
|
| overlapsAny,InteractionSet,Vector-method |
Man page
|
| overlapsAny,InteractionSet,missing-method |
Man page
|
| overlapsAny,Vector,GInteractions-method |
Man page
|
| overlapsAny,Vector,InteractionSet-method |
Man page
|
| pairdist |
Man page
|
| pairdist,ContactMatrix-method |
Man page
|
| pairdist,GInteractions-method |
Man page
|
| pairdist,InteractionSet-method |
Man page
|
| pairs |
Man page
|
| pairs,GInteractions-method |
Man page
|
| pairs,InteractionSet-method |
Man page
|
| pcompare,GInteractions,GInteractions-method |
Man page
|
| rbind,ContactMatrix-method |
Man page
|
| rbind,InteractionSet-method |
Man page
|
| reduceRegions |
Man page
|
| reduceRegions,ContactMatrix-method |
Man page
|
| reduceRegions,GInteractions-method |
Man page
|
| reduceRegions,InteractionSet-method |
Man page
|
| regions |
Man page
|
| regions,ContactMatrix-method |
Man page
|
| regions,GInteractions-method |
Man page
|
| regions,InteractionSet-method |
Man page
|
| regions<- |
Man page
|
| regions<-,ContactMatrix-method |
Man page
|
| regions<-,GInteractions-method |
Man page
|
| regions<-,InteractionSet-method |
Man page
|
| replaceRegions<- |
Man page
|
| replaceRegions<-,ContactMatrix-method |
Man page
|
| replaceRegions<-,GInteractions-method |
Man page
|
| replaceRegions<-,InteractionSet-method |
Man page
|
| resize,ContactMatrix-method |
Man page
|
| resize,GInteractions-method |
Man page
|
| resize,InteractionSet-method |
Man page
|
| scat |
Source code
|
| second |
Man page
|
| second,GInteractions-method |
Man page
|
| second,InteractionSet-method |
Man page
|
| seqinfo,GInteractions-method |
Man page
|
| seqinfo,InteractionSet-method |
Man page
|
| seqinfo<-,GInteractions-method |
Man page
|
| seqinfo<-,InteractionSet-method |
Man page
|
| shift,ContactMatrix-method |
Man page
|
| shift,GInteractions-method |
Man page
|
| shift,InteractionSet-method |
Man page
|
| show,ContactMatrix-method |
Man page
|
| show,GInteractions-method |
Man page
|
| show,InteractionSet-method |
Man page
|
| showGInteractions |
Source code
|
| sort,ContactMatrix-method |
Man page
|
| sort,GInteractions-method |
Man page
|
| sort,InteractionSet-method |
Man page
|
| subset,ContactMatrix-method |
Man page
|
| subset,InteractionSet-method |
Man page
|
| subsetByOverlaps |
Man page
|
| subsetByOverlaps,GInteractions,GInteractions-method |
Man page
|
| subsetByOverlaps,GInteractions,InteractionSet-method |
Man page
|
| subsetByOverlaps,GInteractions,Vector-method |
Man page
|
| subsetByOverlaps,InteractionSet,GInteractions-method |
Man page
|
| subsetByOverlaps,InteractionSet,InteractionSet-method |
Man page
|
| subsetByOverlaps,InteractionSet,Vector-method |
Man page
|
| subsetByOverlaps,Vector,GInteractions-method |
Man page
|
| subsetByOverlaps,Vector,InteractionSet-method |
Man page
|
| swapAnchors |
Man page
|
| swapAnchors,GInteractions-method |
Man page
|
| swapAnchors,InteractionSet-method |
Man page
|
| t,ContactMatrix-method |
Man page
|
| trim,ContactMatrix-method |
Man page
|
| trim,GInteractions-method |
Man page
|
| trim,InteractionSet-method |
Man page
|
| unique,ContactMatrix-method |
Man page
|
| unique,GInteractions-method |
Man page
|
| unique,InteractionSet-method |
Man page
|
| updateObject |
Man page
|
| updateObject,GInteractions-method |
Man page
|
| width,ContactMatrix-method |
Man page
|
| width,GInteractions-method |
Man page
|
| width,InteractionSet-method |
Man page
|
