Man pages for LTLA/InteractionSet
Base Classes for Storing Genomic Interaction Data

boundingBoxGet the bounding box
ContactMatrix-accessorsContactMatrix accessors
ContactMatrix-classContactMatrix class and constructors
ContactMatrix-distancesCompute linear distances from ContactMatrix objects
ContactMatrix-overlapsFind overlaps between GRanges and a ContactMatrix
ContactMatrix-sortingContactMatrix sorting and ordering
ContactMatrix-subsetContactMatrix subsetting and combining
conversionConvert between classes
distancesGet the linear distance for each interaction
GInteractions-classGInteractions class and constructors
granges-methodsEquivalents of GRanges methods
interaction-accessorsInteraction accessors
interaction-bindInteraction combining
interaction-compareInteraction comparisons
InteractionSet-classInteractionSet class and constructors
interaction-subsetInteraction subsetting and combining
linearizeLinearize 2D interactions into 1D ranges
linkOverlapsLink overlapping regions
overlapsFind overlaps between interactions in one or two dimensions
pairsExtract paired ranges
LTLA/InteractionSet documentation built on Oct. 31, 2018, 10:19 a.m.