miRNA.coordinates: Chromosomal coordinate for miRNA (hsa) from MiRBase v22
In LXQin/DANA: Data-driven Normalization Assessment for miRNA-Seq Data

miRNA.coordinates

R Documentation

Chromosomal coordinate for miRNA (hsa) from MiRBase v22

Description

Chromosomal coordinates of Homo sapiens microRNAs. Note that all lower-case notation is used for miRNA names.

microRNAs: miRBase v22
genome-build-id: GRCh38
genome-build-accession: NCBI_Assembly:GCA_000001405.15

Hairpin precursor sequences have type "miRNA_primary_transcript". Note, these sequences do not represent the full primary transcript, rather a predicted stem-loop portion that includes the precursor miRNA. Mature sequences have type "miRNA".

Usage

miRNA.coordinates

Format

'miRNA.coordinates' A data frame with 3,619 rows and 7 columns:

name: miRNA name in all lower-case (e.g. "hsa-let-7b", "hsa-mir-100", ...)
chromosome: The chromosome the gene is located on.
position: Nucleotide coordinate on the chromosome.
type: Either "miRNA_primary_transcript" for heirpin precursor sequences or "miRNA" for mature sequences.
start.position, end.position: Starting and ending nucleotide coordinate on the chromosome.
id: Corresponding id (e.g. "MI0000063", "MI0000102")