View source: R/normalization.R
norm.UQ | R Documentation |
Upper quartile (UQ) normalization for miRNA-Seq data.
norm.UQ(raw, groups = rep(1, ncol(raw)))
raw |
Raw read count matrix (rows = genes, cols = samples). |
groups |
Sample groups (subtypes) |
A list with the following elements:
Normalized read counts.
Normalizing factors for scaling the raw data.
rawCounts <- matrix(0:20, nrow = 7)
normCounts <- norm.UQ(rawCounts)
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