Man pages for LabTranslationalArchitectomics/riboWaltz
Optimization of ribosome P-site positioning in ribosome profiling data
| bamtobed | From BAM files to BED files. |
| bamtolist | From BAM files to lists of data tables or GRangesList... |
| bedtolist | From BED files to lists of data tables or GRangesList... |
| cds_coverage | Number of in-frame P-sites per coding sequence or transcript. |
| codon_coverage | Number of reads per codon. |
| codon_usage_psite | Empirical codon usage indexes. |
| create_annotation | Annotation data table. |
| duplicates_filter | Duplicates filtering. |
| frame_psite | Percentage of P-sites per reading frame. |
| frame_psite_length | Percentage of P-sites per reading frame stratified by read... |
| length_filter | Read length filtering. |
| metaheatmap_psite | Ribosome occupancy metaheatmaps at single-nucleotide... |
| metaprofile_psite | Ribosome occupancy metaprofiles at single-nucleotide... |
| mm81cdna | Annotation data table |
| psite | Ribosome P-sites position within reads. |
| psite_info | Update reads information according to the inferred P-sites. |
| psite_offset | P-site offsets data table |
| reads_list | Reads information data table |
| region_psite | Percentage of P-sites per transcript region. |
| rends_heat | Metaheatmaps of the two extremities of the reads. |
| rlength_distr | Read length distributions. |
