Man pages for LabTranslationalArchitectomics/riboWaltz
Optimization of ribosome P-site positioning in ribosome profiling data

bamtobedConvert BAM files into BED files.
bamtolistConvert BAM files into a list of data tables or into a...
bedtolistConvert BED files into a list of data tables or a...
codon_coverageCompute the number of reads per codon.
codon_usage_psiteCompute and plot empirical codon usage indexes.
create_annotationCreate an annotation data table.
frame_psiteCompute the percentage of P-sites per frame.
frame_psite_lengthCompute the number of P-sites per frame stratified by read...
length_filterFilter the reads according to their length.
metaheatmap_psitePlot ribosome occupancy metaheatmaps at single-nucleotide...
metaprofile_psitePlot ribosome occupancy metaprofiles at single-nucleotide...
mm81cdnaAnnotation
psiteIdentify the ribosome P-site position within the reads.
psite_infoUpdate reads information according to the inferred P-sites.
psite_offsetP-site offsets
psite_per_cdsCompute the number of in-frame P-sites per coding sequence.
reads_listReads information
reads_psite_listP-sites and reads information
region_psitePlot the percentage of P-sites per transcript region.
rends_heatPlot metaheatmaps based on the two extremities of the reads.
rlength_distrPlot read length distributions.
LabTranslationalArchitectomics/riboWaltz documentation built on Oct. 13, 2018, 4:36 a.m.