bamtobed | From BAM files to BED files. |
bamtolist | From BAM files to lists of data tables or GRangesList... |
bedtolist | From BED files to lists of data tables or GRangesList... |
cds_coverage | Number of in-frame P-sites per coding sequence or transcript. |
codon_coverage | Number of reads per codon. |
codon_usage_psite | Empirical codon usage indexes. |
create_annotation | Annotation data table. |
duplicates_filter | Duplicates filtering. |
frame_psite | Percentage of P-sites per reading frame. |
frame_psite_length | Percentage of P-sites per reading frame stratified by read... |
length_filter | Read length filtering. |
metaheatmap_psite | Ribosome occupancy metaheatmaps at single-nucleotide... |
metaprofile_psite | Ribosome occupancy metaprofiles at single-nucleotide... |
mm81cdna | Annotation data table |
psite | Ribosome P-sites position within reads. |
psite_info | Update reads information according to the inferred P-sites. |
psite_offset | P-site offsets data table |
reads_list | Reads information data table |
region_psite | Percentage of P-sites per transcript region. |
rends_heat | Metaheatmaps of the two extremities of the reads. |
rlength_distr | Read length distributions. |
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