psite_offset: P-site offsets data table

In LabTranslationalArchitectomics/riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data

P-site offsets data table

Description

An example dataset containing length-specific ribosome P-site offsets as returned by psite applied to reads_list.

Usage

psite_offset

Format

A data table with 31 rows and 9 variables:

length

Length of the read, in nucleotides (intended as the width of the reference sequence region covered by the RNA fragment. For further information about this choice please refer to section Details of function bamtolist)

total_percentage

Percentage of reads of the considered length in the whole dataset

start_percentage

Percentage of reads of the considered length aligning on the start codon (if any)

around_start

A logical value whether at least one read of the considered length aligns on the start codon (T = yes, F = no)

offset_from_5

Temporary P-site offset from the 5' end of the read, in nucleotides (before the correction step)

offset_from_3

Temporary P-site offset from the 3' end of the read, in nucleotides (before the correction step)

corrected_offset_from_5

P-site offset from the 5' end of the read, in nucleotides (after the correction step)

corrected_offset_from_3

P-site offset from the 3' end of the read, in nucleotides (after the correction step)

sample

Name of the sample

LabTranslationalArchitectomics/riboWaltz documentation built on Jan. 17, 2024, 12:18 p.m.