Files in LabTranslationalArchitectomics/riboWaltz

Optimization of ribosome P-site positioning in ribosome profiling data

.Rbuildignore

.github/workflows/r.yml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/annotation.R R/cds_coverage.R R/codon_coverage.R R/codon_usage.R R/combine_bam.R R/data.R R/duplicates_filter.R R/frames.R R/length_filter.R R/metaplots.R R/percentage_regions.R R/psites.R R/read_end_metaheatmap_plot.R R/read_length_plot.R README.md ReferenceManual.pdf

RiboWaltz.Rproj

data/mm81cdna.RData

data/psite_offset.RData

data/reads_list.RData

man/bamtobed.Rd man/bamtolist.Rd man/bedtolist.Rd man/cds_coverage.Rd man/codon_coverage.Rd man/codon_usage_psite.Rd man/create_annotation.Rd man/duplicates_filter.Rd man/frame_psite.Rd man/frame_psite_length.Rd man/length_filter.Rd man/metaheatmap_psite.Rd man/metaprofile_psite.Rd man/mm81cdna.Rd man/psite.Rd man/psite_info.Rd man/psite_offset.Rd man/reads_list.Rd man/region_psite.Rd man/rends_heat.Rd man/rlength_distr.Rd

vignettes/example_cu_barplot1.png

vignettes/example_cu_barplot2.png

vignettes/example_cu_barplot3.png

vignettes/example_cu_scatterplot1.png

vignettes/example_cu_scatterplot2.png

vignettes/example_ends_heatmap.png

vignettes/example_frames1.png

vignettes/example_frames2.png

vignettes/example_frames_stratified.png

vignettes/example_length_dist_1_1.png

vignettes/example_length_dist_1_2.png

vignettes/example_length_dist_2.png

vignettes/example_length_dist_3.png

vignettes/example_length_dist_4.png

vignettes/example_length_dist_basic.png

vignettes/example_length_dist_basic_zoom.png

vignettes/example_length_dist_rep1_1.png

vignettes/example_length_dist_rep1_2.png

vignettes/example_length_dist_rep2_1_1.png

vignettes/example_length_dist_rep2_1_2.png

vignettes/example_length_dist_rep2_2.png

vignettes/example_length_dist_rep2_3.png

vignettes/example_metaheatmap.png

vignettes/example_metaprofile1.png

vignettes/example_metaprofile2.png

vignettes/example_metaprofile3.png

vignettes/example_metaprofile4.png

vignettes/example_psite_per_region1.png

vignettes/example_psite_per_region2.png

vignettes/meta_psite_length28.png

vignettes/meta_psite_length31.png

vignettes/my-vignette.R vignettes/my-vignette.Rmd

vignettes/my-vignette.html

vignettes/ribowaltz.png

LabTranslationalArchitectomics/riboWaltz documentation built on Jan. 17, 2024, 12:18 p.m.