R/rse_tx-data.R

In LieberInstitute/qsvaR: Generate Quality Surrogate Variable Analysis for Degradation Correction

#' Example of RSE object with RNA-seq transcript quantification data
#'
#' This data is a [RangedSummarizedExperiment-class][SummarizedExperiment::RangedSummarizedExperiment-class]
#' with transcript quantification data stored in an "tpm" assay. It is
#'  used to demonstrate the use of qsvaR in bulk RNA-seq data.
#'
#'
#' @name rse_tx
#' @docType data
#' @format A [RangedSummarizedExperiment-class][SummarizedExperiment::RangedSummarizedExperiment-class]
#' @keywords datasets
#' @seealso [getPCs] [k_qsvs] [getDegTx] [qSVA]
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