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In LieberInstitute/spatialLIBD: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

name: Bug Report about: Describe the bug in detail title: "[BUG] A short description of the bug" labels: '' assignees: ''

Please ask questions about how to use spatialLIBD on the Bioconductor Support Site using the appropriate tag(s) including the one for this package.

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Describe the bug

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Provide a minimally reproducible example (reprex)

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For tips on creating a reprex, see this StackOverflow link.

Expected behavior

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R Session Information

Please report the output of either sessionInfo() or sessioninfo::session_info() here.

options(width = 120)
## insert session info here
# sessioninfo::session_info() ## provides GitHub, pandoc, and other details
# sessionInfo() ## base R function in case you don't want to install sessioninfo

Indicate whether BiocManager::valid() returns TRUE.

• [ ] BiocManager::valid() is TRUE

Note. To avoid potential issues with version mixing and reproducibility, do not install packages from GitHub.

Additional Context

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Is the package installed via bioconda?

We find that bioconda installations can often be problematic due to the nature of the setup environment and potential for version mixing.

The preferred method for installing Bioconductor software through BiocManager and we do not support issues related to bioconda installations at this time.

LieberInstitute/spatialLIBD documentation built on Nov. 4, 2024, 11:57 a.m.