dev/01_start.R

In LieberInstitute/spatialLIBD: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

# Building a Prod-Ready, Robust Shiny Application.
#
# Each step is optional.
#
# 1 - On init
#
## 1.1 - Fill the descripion & set options
##
## Add information about the package that will contain your app

golem::fill_desc(
    pkg_name = "spatialLIBD", # The Name of the package containing the App
    pkg_title = "LIBD Visium spatial transcriptomics human pilot data inspector", # The Title of the package containing the App
    pkg_description = "Inspect interactively the spatial transcriptomics 10x Genomics Visium data from Maynard, Collado-Torres et al, 2020 analyzed by Lieber Institute for Brain Development researchers and collaborators.", # The Description of the package containing the App
    author_first_name = "Leonardo", # Your First Name
    author_last_name = "Collado-Torres", # Your Last Name
    author_email = "lcolladotor@gmail.com", # Your Email
    repo_url = "https://github.com/LieberInstitute/spatialLIBD" # The (optional) URL of the GitHub Repo
)

## Use this desc to set {golem} options

golem::set_golem_options()

## 1.2 - Set common Files
##
## If you want to use the MIT licence, README, code of conduct, lifecycle badge, and news

# usethis::use_mit_license( name = "Golem User" )  # You can set another licence here
usethis::use_readme_rmd(open = FALSE)
usethis::use_code_of_conduct()
usethis::use_lifecycle_badge("Experimental")
usethis::use_bioc_badge()

usethis::use_news_md(open = FALSE)
usethis::use_git()
usethis::use_package_doc()

## 1.3 - Add a data-raw folder
##
## If you have data in your package
# usethis::use_data_raw( name = "my_dataset", open = FALSE ) # Change "my_dataset"

## 1.4 - Init Tests
##
## Create a template for tests

# golem::use_recommended_tests()

## 1.5 : Use Recommended Package

# golem::use_recommended_deps()

## 1.6 Add various tools

# If you want to change the favicon (default is golem's one)
# golem::remove_favicon()
# golem::use_favicon() # path = "path/to/ico". Can be an online file.

# Add helper functions
# golem::use_utils_ui()
# golem::use_utils_server()

# You're now set!
# go to dev/02_dev.R
rstudioapi::navigateToFile("dev/02_dev.R")