API for LihuaJulieZhu/GUIDEseq
GUIDE-seq and PEtag-seq analysis pipeline
| Global functions | |
|---|---|
| .PAMpatternSearch | Source code |
| .addPAMpattern | Source code |
| .annotate | Source code |
| .findProminentPeaks | Source code |
| .getMatchedPAMInd | Source code |
| .getPAMInd | Source code |
| .getReadLengthFromCigar | Source code |
| .getStrandedCoverage | Source code |
| .getSubSeq | Source code |
| .locMaxPos | Source code |
| .locMaxPos2 | Source code |
| .maskSubSeq | Source code |
| .mismatches_as_IntegerList | Source code |
| .nucleotideSubstitutionMatrix | Source code |
| .updateScore | Source code |
| GUIDEseq | Man page |
| GUIDEseq-package | Man page |
| GUIDEseqAnalysis | Man page Source code |
| PEtagAnalysis | Man page Source code |
| annotateOffTargets | Man page |
| buildFeatureVectorForScoringBulge | Man page Source code |
| combineOfftargets | Man page Source code |
| compareSamples | Man page Source code |
| createBarcodeFasta | Man page Source code |
| getAlnWithBulge | Source code |
| getBestAlnInfo | Man page Source code |
| getPeaks | Man page Source code |
| getPeaks.old | Source code |
| getUniqueCleavageEvents | Man page Source code |
| getUsedBarcodes | Man page Source code |
| importBAMAlignments | Source code |
| importBEDAlignments | Source code |
| mergePlusMinusPeaks | Man page Source code |
| offTargetAnalysisOfPeakRegions | Man page Source code |
| offTargetAnalysisWithBulge | Man page Source code |
| peaks.gr | Man page |
| plotAlignedOfftargets | Man page Source code |
| plotHeatmapOfftargets | Man page Source code |
| plotTracks | Man page Source code |
| rbind_dodge | Source code |
| uniqueCleavageEvents | Man page |
